Package: a2bcovid 0.1.0
Chris Illingworth
a2bcovid: Inferring COVID-19 Transmission Events from Sequence and Location Data
A tool which combines genome sequence and the locations of infected individuals, using a statistical and evolutionary model, to estimate the likelihood that transmission occurred between particular individuals, and then to identify clusters of infections. It is currently designed to apply to COVID-19 infection dynamics on hospital wards.
Authors:
a2bcovid_0.1.0.tar.gz
a2bcovid_0.1.0.zip(r-4.5)a2bcovid_0.1.0.zip(r-4.4)a2bcovid_0.1.0.zip(r-4.3)
a2bcovid_0.1.0.tgz(r-4.4-x86_64)a2bcovid_0.1.0.tgz(r-4.4-arm64)a2bcovid_0.1.0.tgz(r-4.3-x86_64)a2bcovid_0.1.0.tgz(r-4.3-arm64)
a2bcovid_0.1.0.tar.gz(r-4.5-noble)a2bcovid_0.1.0.tar.gz(r-4.4-noble)
a2bcovid_0.1.0.tgz(r-4.4-emscripten)a2bcovid_0.1.0.tgz(r-4.3-emscripten)
a2bcovid.pdf |a2bcovid.html✨
a2bcovid/json (API)
| # Install 'a2bcovid' in R: |
| install.packages('a2bcovid', repos = c('https://chjackson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/chjackson/a2bcovid/issues
Last updated 2 years agofrom:bd1f41d86d. Checks:OK: 1 NOTE: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win-x86_64 | NOTE | Oct 27 2024 |
| R-4.5-linux-x86_64 | NOTE | Oct 27 2024 |
| R-4.4-win-x86_64 | NOTE | Oct 27 2024 |
| R-4.4-mac-x86_64 | NOTE | Oct 27 2024 |
| R-4.4-mac-aarch64 | NOTE | Oct 27 2024 |
| R-4.3-win-x86_64 | NOTE | Oct 27 2024 |
| R-4.3-mac-x86_64 | NOTE | Oct 27 2024 |
| R-4.3-mac-aarch64 | NOTE | Oct 27 2024 |
Exports:a2bcovida2bcovid_applong_to_wideplot_a2bcovidwide_to_long
Dependencies:base64encbslibcachemclicolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2ggtextgluegridtextgtablehtmltoolshttpuvisobandjpegjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpngpromisespurrrR6rappdirsRColorBrewerRcpprlangrstudioapisassscalesshinyshinyBSsourcetoolsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtable
