Package: a2bcovid 0.1.0

Chris Illingworth

a2bcovid: Inferring COVID-19 Transmission Events from Sequence and Location Data

A tool which combines genome sequence and the locations of infected individuals, using a statistical and evolutionary model, to estimate the likelihood that transmission occurred between particular individuals, and then to identify clusters of infections. It is currently designed to apply to COVID-19 infection dynamics on hospital wards.

Authors:Chris Illingworth [aut, cre], Chris Jackson [aut]

a2bcovid_0.1.0.tar.gz
a2bcovid_0.1.0.zip(r-4.5)a2bcovid_0.1.0.zip(r-4.4)a2bcovid_0.1.0.zip(r-4.3)
a2bcovid_0.1.0.tgz(r-4.4-x86_64)a2bcovid_0.1.0.tgz(r-4.4-arm64)a2bcovid_0.1.0.tgz(r-4.3-x86_64)a2bcovid_0.1.0.tgz(r-4.3-arm64)
a2bcovid_0.1.0.tar.gz(r-4.5-noble)a2bcovid_0.1.0.tar.gz(r-4.4-noble)
a2bcovid_0.1.0.tgz(r-4.4-emscripten)a2bcovid_0.1.0.tgz(r-4.3-emscripten)
a2bcovid.pdf |a2bcovid.html✨
a2bcovid/json (API)

Peer review:

Bug tracker:https://github.com/chjackson/a2bcovid/issues

On CRAN:

5 exports 3 stars 0.49 score 69 dependencies

Last updated 2 years agofrom:bd1f41d86d. Checks:OK: 1 NOTE: 8. Indexed: yes.

Exports:a2bcovida2bcovid_applong_to_wideplot_a2bcovidwide_to_long

Dependencies:base64encbslibcachemclicolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2ggtextgluegridtextgtablehtmltoolshttpuvisobandjpegjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpngpromisespurrrR6rappdirsRColorBrewerRcpprlangrstudioapisassscalesshinyshinyBSsourcetoolsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtable