Package: disbayes
Title: Bayesian Multi-State Modelling of Chronic Disease Burden Data
Date: 2026-04-24
Version: 1.1.1
Authors@R: 
    person("Christopher", "Jackson", , "chris.jackson@mrc-bsu.cam.ac.uk", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-6656-8913"))
Description: Estimation of incidence and case fatality for a chronic
        disease, given partial information, using a multi-state model.
        Given data on age-specific mortality and either incidence or
        prevalence, Bayesian inference is used to estimate the
        posterior distributions of incidence, case fatality, and
        functions of these such as prevalence.  The methods are
        described in Jackson et al. (2023)
        <doi:10.1093/jrsssa/qnac015>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Biarch: true
Depends: R (>= 3.5.0)
Imports: dplyr, tidyr, magrittr, tibble, generics, methods, Rcpp (>=
        0.12.0), rstan (>= 2.26.0), mgcv, SHELF, ggplot2, loo,
        matrixStats
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppParallel, RcppEigen
        (>= 0.3.3.3.0), rstan (>= 2.26.0), StanHeaders (>= 2.26.0)
Suggests: knitr, rmarkdown, rstantools (>= 2.0.0.9000), tempdisagg,
        testthat, codetools
VignetteBuilder: knitr
SystemRequirements: GNU make
URL: https://chjackson.github.io/disbayes/
BugReports: https://github.com/chjackson/disbayes/issues
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://chjackson.r-universe.dev
Date/Publication: 2026-04-24 16:07:52 UTC
RemoteUrl: https://github.com/chjackson/disbayes
RemoteRef: HEAD
RemoteSha: 0a0dd048b4684259cf47c41d78193baf6f66f0d0
NeedsCompilation: yes
Packaged: 2026-06-23 06:20:05 UTC; root
Author: Christopher Jackson [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6656-8913>)
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>