Package: a2bcovid
Type: Package
Title: Inferring COVID-19 Transmission Events from Sequence and
        Location Data
Version: 0.1.0
Authors@R: 
    c(person(given = "Chris",
           family = "Illingworth",
           role = c("aut", "cre"),
           email = "chris.illingworth@mrc-bsu.cam.ac.uk"),
	   person(given = "Chris",
	   family = "Jackson",
	   role = c("aut"), 
	   email = "chris.jackson@mrc-bsu.cam.ac.uk"))
Maintainer: Chris Illingworth <chris.illingworth@mrc-bsu.cam.ac.uk>
Description: A tool which combines genome sequence and the locations of
        infected individuals, using a statistical and evolutionary
        model, to estimate the likelihood that transmission occurred
        between particular individuals, and then to identify clusters
        of infections.  It is currently designed to apply to COVID-19
        infection dynamics on hospital wards.
License: GPL-3
Encoding: UTF-8
Imports: Rcpp (>= 1.0.5), shiny, shinyBS, rstudioapi, ggplot2, ggtext,
        scales, tidyr, tidyselect, dplyr, magrittr
Suggests: testthat, knitr, rmarkdown
LinkingTo: Rcpp
RoxygenNote: 7.1.2
VignetteBuilder: knitr
Depends: R (>= 2.10)
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://chjackson.r-universe.dev
Date/Publication: 2022-07-16 10:29:18 UTC
RemoteUrl: https://github.com/chjackson/a2bcovid
RemoteRef: HEAD
RemoteSha: bd1f41d86daf8292bb32214c0f5c62fc66a413d9
NeedsCompilation: yes
Packaged: 2026-07-04 21:34:39 UTC; root
Author: Chris Illingworth [aut, cre],
  Chris Jackson [aut]